Services for the European Open Science Cloud

Data processing & Data analysis

How to apply bioinformatics to metallo-proteins

Table of Contents

• Sequence patterns and protein domains
• MetalPDB and related tools
• Structural Databases
• Structure refinement and protein dynamics

OPENCoastS platform video tutorial

This video tutorial shows how to use this simple service to create coastal forecast systems.
Access at: https://opencoasts.ncg.ingrid.pt/

OPENCoastS user manual

OPENCoastS is an online service (https://opencoasts.ncg.ingrid.pt/) that assembles on-demand circulation forecast systems for selected coastal areas and keeps them running operationally for a period defined by the user. This service generates daily forecasts of water levels and vertically averaged velocities over the region of interest for 48 hours, based on numerical simulations of all relevant physical processes. Presently, all forecasts are made with the model SCHISM (http://ccrm.vims.edu/schismweb/) and are supported by the computational resources from INCD - Infraestrutura Nacional de Computação Distríbuida (https://www.incd.pt), a node of the EGI - European Grid Infrastructure (https://www.egi.eu). Access to the service is granted through a registration procedure, and is obtained after acceptance of the registration by the OPENCoastS user support. OPENCoastS is jointly developed and maintained by LNEC - Laboratório Nacional de Engenharia Civil (LNEC - http://www.lnec.pt), LIP - Laboratório de Instrumentação e Física Experimental de Partículas (LIP - https://www.lip.pt), CNRS-LIENS - Centre National De La Recherche Scientifique - LIttoral ENvironnement et Sociétés (CNRS-LIENS - https://lienss.univ-larochelle.fr) and Universidad de Cantabria (UC - https://web.unican.es).

DIRAC Portal for EISCAT Data

This material provides detailed information about EISCAT data portal built on EGI Workload Manage service (using DIRAC technology). The prototype service is developed by EOSC-hub EISCAT-3D Competence Centre.

EGI Jupyter Notebooks examples

Some simple notebooks that showcase the EGI Notebooks features.

DODAS Service

This presentation give an introduction of DODAS (Dynamic On Demand Analysis Service) service, including the architecture of the service, and concrete use case examples. The training is given during VIRGO Comping School. 

OPENCoastS Service

This presentation introduces OPENCoastS Service, a platform to implement forecast systems for a system chosen by the user, using a browser-based, user-friendly, interface. It comes with a hand-on tutorial . These materials was used during the OPENCoast Training event at the IMUM 2018 workshop. More detailed information can be found at the service manual.

ECAS_notebooks: Time_series_extraction

This notebook calculates the time series extraction

ECAS_notebooks: Time_series_difference

This notebook calculates the time series difference

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